RECOMB - LNCS, 2020. Santos, D. Comas, O. Balanovsky, E. Balanovska, P. Zalloua, H. Soodyall, R. Pitchappan, A. GaneshPrasad, M. Hammer, L. Matisoo-Smith, R.S. The Computational Genomics group, at IBM TJ Watson Research Center, pursue basic and exploratory research at the interface of algorithmics and genomics. Ashokan, K.T. The confluence of genomic technologies and cognitive computing has brought us to the doorstep of widespread usage of personalized medicine. We were interested in population genetics approaches for characterizing the variations in human genomes as well as computational methods for understanding the functional consequences of this variation. Kaplan, E.A. S. Saadè, J.-B. Global efforts to identify, treat, and limit the spread of the disease mobilized unprecedented resources toward Genomics, a cutting-edge field of biology with especially valuable medical applications. Topological data analysis revealed complexity behind ER positive breast cancer subtypes in TCGA transcriptome data T. Koyama,A. 15. Overview; Research - selected tab, Publications; Software; Group members; Genomics. About. By Biotecnika, 16 Septmember, 2019. She is a visiting professor at the Courant Institute of Mathematical Sciences, New York. A new technology platform shows early signs of promise. - Computational Genomics Who We Are. Salloum, Y. Al-Sarraj, Y. Akle, K. Hirbli, J. Romanos, F. Mouzaya, D. Gauguier. IBM. E. Elhaik, T. Tatarinova, D. Chebotarev, I.S. The book covers topics from R programming, to machine learning and statistics, to the latest genomic data analysis techniques. Publications 15. Ziv Bar-Joseph (zivbj[AT]cs.cmu.edu) Office Hours: by appointment, 8006 Gates Hillman Complex, Machine Learning Department, Carnegie-Mellon University In the Computational Genomics programme, novel computational methods were developed, both for managing and analyzing large datasets. Sustainable Cocoa ; The Mapping of Humanity's Family Tree ; Computational Genomic Git. Dubash, M. Sade-Feldman, B. Wesley, E. Horwitz, G.M. Computational Genomics Group, IBM T.J. Watson Research Center Cognitive and Cloud, Data-Centric Systems Solutions, IBM T.J. Watson Research Center Healthcare and Life Sciences, IBM Research – Almaden Science and Technology Research Council (STFC), United Kingdom The Industrial and Applied Genomics Group of the Accelerated Discovery Lab at IBM Research is looking for a summer intern to work on computational biology in the Sequence the Food Supply Chain Consortium. PhD. Lies, Gosh Darn Lies, and Not Enough Good Statistics: Why Epidemic Model Parameter Estimation Fails. 16), 2012. Royyuru, GenomicTools: a computational platform for developing high-throughput analytics in genomics, Non-redundant Representation of Ancestral Recombinations Graphs. About. Cognitive systems, such as Watson for Genomics (WG), integrate massive amounts of new omic data with the current body of knowledge to … and the Sequence the Food Supply Chain Consortium . Prior to joining IBM in … A. Weiss, E. Charbonnier, E. Ellertsdòttir, Geographical Structure of the Y-chromosomal Genetic Landscape of the Levant: A coastal-inland contrast, Estimating the Ancestral Recombinations Graph (ARG) as Compatible Networks of SNP Patterns, Y-chromosome diversity in Lebanon is structured by recent historical events. About this manual. They have written this manual over the course of several years, and in a variety of formats. Contact. Salloum, S. Youhanna, A. Saad, H. El Bayeh, E. Chammas. TACG is open to collaboration globally. TACG largely focuses on the genetic impact of non-communicable diseases in … University of Warwick. ... Food authentication is emerging as an important field, and at IBM Research we are applying a multidisciplinary approach in collaboration with industry and academia to address this global challenge. In the quest for immortality, tumor cells try to save themselves by boosting mitochondrial metabolism, Textual data compression in computational biology: Algorithmic techniques, Genetic inactivation of the polycomb repressive complex 2 in T cell acute lymphoblastic leukemia, Large Scale Association Analysis Identifies Three Susceptibility Loci for Coronary Artery Disease, Evaluation of Methods for De Novo Genome Assembly from High-Throughput Sequencing Reads Reveals Dependencies That Affect the Quality of the Results, Randomization techniques for assessing the significance of gene periodicity results, Sequencing of a QTL-rich Region of the Theobroma cacao Genome using Pooled BACs and the Identification of Trait Specific Candidate Genes, The Three Steps of Clustering in the Post-Genomic Era: A Synopsis, IRiS: Construction of ARG networks at genomic scales, Influences of history, geography, and religion on genetic structure: the Maronites in Lebanon, A Minimal Descriptor of an Ancestral Recombinations Graph, Assessing Pooled BAC and Whole Genome Shotgun Strategies for Assembly of Complex Genomes, Speeding up the Consensus Clustering methodology for microarray data analysis, The autophagic tumor stroma model of cancer or "battery-operated tumor growth": A simple solution to the autophagy paradox, The autophagic tumor stroma model of cancer: Role of oxidative stress and ketone production in fueling tumor cell metabolism, Ancestry informative markers for fine-scale individual assignment to worldwide populations, Ketones and lactate "fuel" tumor growth and metastasis: Evidence that epithelial cancer cells use oxidative mitochondrial metabolism, Y-chromosome R-M343 African lineages and sickle cell disease reveal structured assimilation in Lebanon, Understanding the "lethal" drivers of tumor-stroma co-evolution: emerging role(s) for hypoxia, oxidative stress and autophagy/mitophagy in the tumor micro-environment, A New Method to Reconstruct Recombination Events at a Genomic Scale, Loss of Stromal Caveolin-1 Leads to Oxidative Stress, Mimics Hypoxia, and Drives Inflammation in the Tumor Microenvironment, Conferring the "Reverse Warburg Effect": A Transcriptional Informatics Analysis with Validation, Transcriptional Evidence for the "Reverse Warburg Effect" in Human Breast Cancer Tumor Stroma and Metastasis: Similarities with Oxidative Stress, Inflammation, Alzheimer's Disease, and "Neuron-Glia Metabolic Coupling", Parental consanguinity and family history of coronary artery disease strongly predict early stenosis, Dynamic Changes in the Human Methylome During Differentiation, Recombinomics: Population Genomics from a Recombination Perspective, Alu and B1 repeats have been selectively retained in upstream and intronic regions of genes of specific functional classes, A conserved activation element in BMP signaling during Drosophila development, Minimizing recombinations in consensus networks for phylogeographic studies, Anterior-posterior positional information in the absence of a strong Bicoid gradient, Identifying genetic traces of historical expansions: Phoenician footprints in the Mediterranean, Human and mouse introns are linked to the same processes and functions through each genome's most frequent non-conserved motifs. 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